Similar HOG based on domains to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0752938 with 71 members (PR domain zinc finger protein)

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria /

Completeness score: 0.99

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

40.2%

This HOG has 7606 similar HOGs:

HOG ID	Deepest level	HOG size	Representative Domain Architecture	Prevalence	Similarity
HOG:E0759193	Deuterostomia	337		42.1%	5
HOG:E0762392	Bilateria	201		56.7%	5
HOG:E0753199	Vertebrata	169		46.2%	5
HOG:E0756246	Chordata	167		51.5%	5
HOG:E0770291	Bilateria	165		34.5%	5
HOG:E0765860	Bilateria	82		11.0%	5
HOG:E0737758	Sarcopterygii	74		77.0%	5
HOG:E0739211	Euteleostomi	70		35.7%	5
HOG:E0638828	Hexapoda	61		59.0%	5
HOG:E0642373	Mandibulata	54		44.4%	5
HOG:E0739349	Euteleostomi	50		86.0%	5
HOG:E0642773	Arthropoda	49		44.9%	5
HOG:E0697584	Clupeocephala	47		34.0%	5
HOG:E0702695	Neopterygii	47		57.4%	5
HOG:E0695542	Euteleosteomorpha	38		50.0%	5
HOG:E0774659	Bilateria	26		34.6%	5
HOG:E0537531	Lophotrochozoa	18		16.7%	5
HOG:E0778301	Eumetazoa	18		22.2%	5
HOG:E0536977	Lophotrochozoa	17		58.8%	5
HOG:E0711627	Archelosauria	16		62.5%	5
HOG:E0532641	Mollusca	14		57.1%	5
HOG:E0538474	Lophotrochozoa	14		71.4%	5
HOG:E0712295	Sauria	14		78.6%	5
HOG:E0751388	Gnathostomata	14		21.4%	5
HOG:E0649478	Ecdysozoa	13		30.8%	5

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